Publications

21. AZ Rosenthal, Y Qi, S Hormoz, J Park, SH Li, MB Elowitz.
Metabolic interactions between dynamic bacterial subpopulations
eLife 7:e33099 (2018). 

20. J Park, M Dies, Y Lin, S Hormoz, SE Smith-Unna, S Quinodoz, MJ Hernández-Jiménez, J Garcia-Ojalvo, JWC Locke, MB Elowitz.
Molecular Time Sharing through Dynamic Pulsing in Single Cells
Cell Systems 6 (2): 1-14 (2018). Featured on the cover.

19. KL Frieda*, JM Linton*, S Hormoz*, J Choi, KK Chow, ZS Singer, MW Budde, MB Elowitz, L Cai.
Synthetic recording and in situ readout of lineage information in single cells.
Nature 541 (7635): 107-111 (2017). * equal contribution

See Also: News & Views by Lauren Beck and Arjun Raj, "Systems biology: Molecular memoirs of a cellular family." Nature 541 (7635): 38-39 (2017).

18. S Hormoz*, ZS Singer*, JM Linton, YE Antebi, BI Shraiman,  MB Elowitz.
Inferring Cell-State Transition Dynamics from Lineage Trees and Endpoint Single-Cell Measurements.
Cell Systems 3 (5): 419-433 (2016). Featured on the cover. * equal contribution.

For an interactive visualization of our data visit: http://cellerie.caltech.edu/

See Also: Commentary by Jordi Garcia-Ojalvo, "Cell Lineage Trees Bear Fruit." Cell Systems 3 (6): 511-513 (2016).

17. MP Brenner, S Hormoz, A Pumir.
Potential singularity mechanism for the Euler equations.
Physical Review Fluids 1 (8): 084503 (2016).

16. S Hormoz, N Desprat, BI Shraiman.
Inferring epigenetic dynamics from kin correlations.
PNAS 112, (18) E2281-E2289 (2015).

15. S Hormoz, G Bhanot, M Biehl, E Bilal, P Meyer, R Norel, K Rhrissorrakrai, A Dayarian.
Inter-species inference of gene set enrichment in lung epithelial cells from large proteomic and transcriptomic data sets.
Bioinformatics 31 (4): 492-500 (2015).

14. A Dayarian, R Romero, Z Wang, M Biehl, E Bilal, S Hormoz, P Meyer, R Norel, K Rhrissorrakrai, G Bhanot, F Luo, AL Tarca.
Predicting protein phosphorylation from gene expression: top methods from the IMRPOVER species translation challenge.
Bioinformatics 31 (4): 462-470 (2015).

13. M Biehl, P Sadowski, G Bhanot, E Bilal, A Dayarian, P Meyer, R Norel, K Rhrissorrakrai, MD Zeller, S Hormoz.
Inter-species prediction of protein phosphorylation in the sbv IMPROVER species translation challenge.
Bioinformatics 31 (4): 453-461 (2015).

12. E Fonda, DP Meichle, NT Ouellette, S Hormoz, DP Lathrop.
Direct observation of Kelvin waves excited by quantized vortex reconnection.
PNAS 111, 4707-4710 (2014). Featured on the cover.

11. S Hormoz.
Amino acid composition of proteins reduces deleterious impact of mutations.
Scientific Reports 3, 2919 (2013).

10. S Hormoz.
Stem cell population asymmetry can reduce rate of replicative aging.
Journal of Theoretical Biology 331, 19-27 (2013).

9. S Hormoz.
Quantum collapse and the second law of thermodynamics.
Physical Review E 87 (2), 022129 (2013).

8. S Hormoz.
Cross talk and interference enhance information capacity of a signaling pathway.
Biophysical Journal 104 (5), 1170-1180 (2013). Featured on the cover.

7. S Hormoz, MP Brenner.
Non-universal and non-singular asymptotics of interacting vortex filaments.
Procedia IUTAM 7, 97-106 (2013).

6. S Hormoz, B Widom.
Models of the hydrophobic attraction.
Proceedings of the International School of Physics  "Enrico Fermi" Course CLXXVI "Complex Materials in Physics and Biology" ed. by F Mallamace and HE Stanley (IOS, Amsterdam; SIF, Bologna) (2012).

5. S Hormoz, MP Brenner.
Absence of singular stretching of interacting vortex filaments.
Journal of Fluid Mechanics 707, 191-204 (2012).

4. EA van Nierop, S Hormoz, KZ House, MJ Aziz.
Effect of absorption enthalpy on temperature-swing CO2 separation process performance.
Energy Procedia 4, 1783-1790 (2011).

3. S Hormoz, MP Brenner.
Design principles for self-assembly with short-range interactions.
PNAS 108, 5193-5198 (2011).

See Also: News and Views, D Frenkel, DJ Wales. Nature Materials 10, 410-411 (2011).

2. S Hormoz, S Ramanathan.
Limits on vanadium oxide Mott metal-insulator transition field-effect transistors.
Solid State Electronics 54, 654 (2010).

1. MA Belkin, J Fan, S Hormoz, F Capasso, S Khanna, M Lachab, AG Davies, EH Linfield.
Terahertz quantum cascade lasers with metal-metal copper waveguides operating up to 178K.
Optics Express 16, 3242 (2008).

Patents

 

1. L Cai, MB Elowitz, JD Linton, CH Joonhyuk, KL Frieda, S Hormoz, and KK Chow.
Recording and mapping lineage information and molecular events in individual cells.
U.S. Patent Application 14/620,133, filed February 11, 2015.